Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQTCAGQLR--GLAPCLRYSV----PPLPGQ-VPPA-----------PGPECCSALGAVSRDCACGTFS----------------------IINSLPAKCALPPVSCQ
1PSY Chain:A ((16-116))
-QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38054 for 391 contacts (-97.3/contact) +
2D Compatibility (PS) -6098 + (NN) -1701 + (LL) 180
1D Compatibility (HY) -4400 + (ID) 700
Total energy: -50773.0 ( -129.85 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: