Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQCLDNLSNMQVCAPLVLPGAVNPAPNSNCCIALQATNKDCICNALRA----------------------ATTFTTTCNLPSL-DCGITI
1PNB Chain:B ((11-72))
--------------------------REQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCPF--
General information:
TITO was launched using:
RESULT:
Template:
1PNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22134 for 240 contacts (-92.2/contact) +
2D Compatibility (PS) -4204 + (NN) -2019 + (LL) 1572
1D Compatibility (HY) -4800 + (ID) 500
Total energy: -32085.0 ( -133.69 by residue)
QMean score : 0.252
(partial model without unconserved sides chains):
PDB file :
Tito_1PNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNB-query.scw
PDB file :
Tito_Scwrl_1PNB.pdb
: