Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QICTSQLNSLNVCAPFVVPGAPNTNPSTDCCNALGAVQHDCLCSTLQI----------------------AARLPSQCNLPPI-TCGN
1PNB Chain:B ((11-71))
--------------------------REQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCP-
General information:
TITO was launched using:
RESULT:
Template:
1PNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24853 for 227 contacts (-109.5/contact) +
2D Compatibility (PS) -3839 + (NN) -1297 + (LL) 820
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -33969.0 ( -149.64 by residue)
QMean score : 0.267
(partial model without unconserved sides chains):
PDB file :
Tito_1PNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNB-query.scw
PDB file :
Tito_Scwrl_1PNB.pdb
: