Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QTCQNQLNSLNVCAPFVVPGAANTSPNAECCNALESVQNDCICNTLRI----------------------AGRLPSLCNLSPI-NCGN
1PNB Chain:B ((11-71))
--------------------------REQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCP-
General information:
TITO was launched using:
RESULT:
Template:
1PNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22811 for 227 contacts (-100.5/contact) +
2D Compatibility (PS) -4085 + (NN) -2071 + (LL) 1020
1D Compatibility (HY) -4400 + (ID) 750
Total energy: -33097.0 ( -145.80 by residue)
QMean score : 0.342
(partial model without unconserved sides chains):
PDB file :
Tito_1PNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNB-query.scw
PDB file :
Tito_Scwrl_1PNB.pdb
: