Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGACGKTSPDQEAMKLAPCAMAAQDAKAAVSDSCCTQVRSIGQNPSCLCAVMLSDM-A---KA--SG-----IKAEIAITIPKRCNIANRPVGYKCGDYTLP
2DS2 Chain:B ((7-64))
------------------------------LRQCCNQLRQV--DRPCVCPVLRQAAQQVLQRQIIQGPQQLRRLFDAARNLPNICNIPNI------------
General information:
TITO was launched using:
RESULT:
Template:
2DS2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29200 for 239 contacts (-122.2/contact) +
2D Compatibility (PS) -5155 + (NN) -4425 + (LL) 2092
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -40188.0 ( -168.15 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_2DS2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DS2-query.scw
PDB file :
Tito_Scwrl_2DS2.pdb
: