Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGKTPIRSAAASLSPCLSAAGNVRAAVPPTCCSKVGSLIKTA-------PKCLCAVLLSPLAKQA-GIKPGIAITIPKRCNIGNRPAGKKCGSK
1AFH Chain:A ((2-80))
------ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKN-AAAGVSGLNAGNAASIPSKCGVSIP---------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45263 for 534 contacts (-84.8/contact) +
2D Compatibility (PS) -7064 + (NN) 63 + (LL) 100
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -56064.0 ( -104.99 by residue)
QMean score : 0.325
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: