Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DMSPSQCKEEQRLLVNACRPVIFG-RSPSAACCQRVRVTHVECVCPVVT-PKLAALIGVERTIKQIEGCGRTVPHNFKCGSITTP
1N89 Chain:A ((7-65))
--------------LAVCASAILSGAKPSGECCGNLRAQQ-GCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP-----------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29785 for 346 contacts (-86.1/contact) +
2D Compatibility (PS) -5902 + (NN) -1189 + (LL) 1332
1D Compatibility (HY) -4800 + (ID) 750
Total energy: -41094.0 ( -118.77 by residue)
QMean score : 0.313
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: