Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGCDILKLTPCVAASRNAKVMPSRQCCSNIAGMGKGLP-----GAKCLCSLLSHPLARSQ-GVAPRIALGIPQKCRIAVP----RGFVCQGIRVPGS
1AFH Chain:A ((6-91))
--QVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNA-AAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSR------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33414 for 564 contacts (-59.2/contact) +
2D Compatibility (PS) -7458 + (NN) 454 + (LL) 452
1D Compatibility (HY) -2000 + (ID) 1050
Total energy: -43016.0 ( -76.27 by residue)
QMean score : 0.155
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: