Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GSDCQNDIQMLETTCYKYVAKDAPTSPPSQECCDTMNGVDVPCVCSYLGAPGIKENISMEKVFYVAQQCGVSIPGNCGGSKRA
1N89 Chain:A ((8-65))
------------AVCASAILSGA---KPSGECCGNLRAQQ-GCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP---------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23251 for 349 contacts (-66.6/contact) +
2D Compatibility (PS) -6076 + (NN) -3371 + (LL) 372
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -35076.0 ( -100.50 by residue)
QMean score : 0.217
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: