Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGATPADQMALKLAPCLTAAKDPEASPSKSCCAAVVDIWGHS-------TECLCAVLLSNTLKRF-GVKVEVAITIPKRCNIANRPIGYKCGDYTLPSLQD
1AFH Chain:A ((2-80))
------ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKN-AAAGVSGLNAGNAASIPSKCGVSIP----------------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46045 for 534 contacts (-86.2/contact) +
2D Compatibility (PS) -7412 + (NN) -6249 + (LL) 588
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -62868.0 ( -117.73 by residue)
QMean score : 0.288
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: