Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QREPAKCGSSDAGSVLMPCFAFLEQQSREPSARCCSAVANSTQKE------PPRCLCVFLDQ----LARAMNRTQPLQLPSLCGDARL----TAERCKGLFVANRFA
1AFH Chain:A ((3-91))
-------SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAAAGVS-GLNAGNAASIPSKCGVSIPYTISTSTDCSR--------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16014 for 533 contacts (-30.0/contact) +
2D Compatibility (PS) -7417 + (NN) 2086 + (LL) 1812
1D Compatibility (HY) -3200 + (ID) 1050
Total energy: -23783.0 ( -44.62 by residue)
QMean score : 0.193
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: