Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATCSNNYSALLPCAAATRSATATPSGACCKVVEGFKS--------NPACLCSTIAAAKAAGY-SINEHNAESIPTRCKLHGYTSCSKKN
1AFH Chain:A ((3-80))
-SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNA-AAGVSGLNAGNAASIPSKCGVSIP-------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32637 for 497 contacts (-65.7/contact) +
2D Compatibility (PS) -7008 + (NN) 593 + (LL) 332
1D Compatibility (HY) -4000 + (ID) 1250
Total energy: -43970.0 ( -88.47 by residue)
QMean score : 0.280
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: