Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGNASPDTEAWKLAPCAAAAQNEKAAPSKSCCLQVKKIGQ-N-------PDCLCAVMLSNTAKSS-GIXPEVAVTIPKRCNLADR-P--VGYKCGAYTLP
1AFH Chain:A ((3-91))
-------SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKN-AAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSR----
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15680 for 574 contacts (-27.3/contact) +
2D Compatibility (PS) -7805 + (NN) -2755 + (LL) 460
1D Compatibility (HY) -2400 + (ID) 1000
Total energy: -29180.0 ( -50.84 by residue)
QMean score : 0.000
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: