Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APIKVAGGVGNCEKDMQWCIDKTEFFTHGYIYERCCYNMI-MKKKCMCLFLKSPKLKI------AARNVNNACGRGGLPKDAFSEFKC
2RKN Chain:A ((1-77))
----AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPT-------C
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17667 for 446 contacts (-39.6/contact) +
2D Compatibility (PS) -7549 + (NN) -3707 + (LL) 744
1D Compatibility (HY) 800 + (ID) 700
Total energy: -28079.0 ( -62.96 by residue)
QMean score : 0.062
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: