Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YCKESLHLCMQHLKLND--RPTWLKCCDRLIIPG-PCMCKYIKDPV------QWKEAYRLMASCGKTVPLNQSLKSYFKCG
2RKN Chain:A ((10-75))
---DELNECKPAVSKENPTSPS-QPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP-----------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30903 for 324 contacts (-95.4/contact) +
2D Compatibility (PS) -5779 + (NN) -2121 + (LL) 764
1D Compatibility (HY) -400 + (ID) 700
Total energy: -39139.0 ( -120.80 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: