Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPVCPLNQSELGICVNVLGLISITTSNAAQCCSILAGLNN-----VSLVSVCACEAVRLNILNLLGITVNLNLRLNGLLGLCRLPVQ----PGFNCLL
1SIY Chain:A ((2-88))
--TCGQVQGNLAQCIGFLQK---GGVVPPSCCTGVKNILNSSRTTADRRAVCSC--LKAAAGA-VR-GINPNNAEA-LPGKCGVNIPYKISTSTNCN-
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76656 for 549 contacts (-139.6/contact) +
2D Compatibility (PS) -8021 + (NN) -962 + (LL) 992
1D Compatibility (HY) -1200 + (ID) 900
Total energy: -86747.0 ( -158.01 by residue)
QMean score : 0.230
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: