Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTNVSERIYDSKNSLKFL---DDEIYQSIERELQRQRSQLQLIASENFASKAVMEAQGSFLTNKYAEGYIGKRYYCGCEYVDEVENLAIERLCKLFNVRFANVQPHSGSQANQAVFASLLTPGDTILGLSISCGGHLTHGAAPNLSGKWFKSIQYAIDRGTCLLDMDEVERLALEHKPKLIIAGASAYPRRMDFKRFREIADKVSAYLLADIAHYAGLIAAGEYPSPAKYAHIITSTTHKTLRGPRGGVVITNDEALHKKVQSAVFPGLQGGPLMHVIAAKAVAFKEALAPEFKAYIKRVVENAKVLAQALQKHGLSVITGGTDSHIVLVDLRPQKLTGKGAVDSLERAGITCNKNSVPFDMEKPTITSGLRFGTAAETTRGLKAENFKEIADLINEVIQGLINGNNSDVERIVKNKVKKICDDFPIY |
2VMZ Chain:A ((1-405)) | --------------MKYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPGVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV--GSEQALEE-ARQRVAALTD----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VMZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -233143 for 3675 contacts (-63.4/contact) +
2D Compatibility (PS) -44018 + (NN) -24283 + (LL) 1160
1D Compatibility (HY) -37200 + (ID) 11550
Total energy: -349034.0 ( -94.98 by residue)
QMean score : 0.551
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