Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVIVLKLPEVTVNWSYPVLNFDLSFRIILISFLSVAFLIVLPAKNFSFSEMLSFFAYTISSLCAILSKQIISVIIFCELMAISASFIIAAGCKDNGPAIRYACVHFFVGIILTAGLAIQNPNLIIMGLLIICACFPFSFWVVDAYPAASLHGASYLSLFTTKISFLIALLHTYNLWQDHAEILAFLGTITAIYGIIFTSLEQNIRRFLAYNVVGQMGILIMTGSLLSHSKNAIPLLILNIIFSIVYQLLLTAVANSIILRTKAVNFNRVGKFMSAEGIYALIAILTMAAFPGTAGFISKSYIAVEIKMNGTNLELYKNLHKILNLSLYLSVGLKFLYYIFITKSRSKLLAEKGGGVAMIILASICVIAGNPYLPIYNKPSIFNLAYNTKNIWSQLNLLLCVTLLFIPLRKLFLPRINLKMDIDWIFRALIPYVVSLFNKLIFKMRKISAGALQNLTNSLTNLYFNNANKLKEALSYDSVSFISASSLFLMSILLVLLCLNH |
| 3RKO Chain:K ((11-48)) | ----------------------------------------------------AAILFVLGLTGLVIRRNLLFMLIGLEIMINASALAFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -23795 for 206 contacts (-115.5/contact) +
2D Compatibility (PS) -3856 + (NN) 54 + (LL) 36616
1D Compatibility (HY) -3600 + (ID) 150
Total energy: 5269.0 ( 25.58 by residue)
QMean score : 0.105
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