Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQYTFRIDNKDPLYKKLIKLPTAYYRLKHDGNKHNIHSNN-----NVILEIGNN-------TNGVK----LRWENDKIVLHKGSSALY
1LPJ Chain:A ((28-96))
-------------ATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKN
General information:
TITO was launched using:
RESULT:
Template:
1LPJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6636 for 223 contacts (-29.8/contact) +
2D Compatibility (PS) -5525 + (NN) 702 + (LL) 664
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -12645.0 ( -56.70 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_1LPJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LPJ-query.scw
PDB file :
Tito_Scwrl_1LPJ.pdb
: