Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFDCLIIFIIVVCIIISITRGFIKELCALMFLFLSAFLTANHYDFFTINYSKYFNSKAMQNIFSTISVFIIFNLIFMIVNNWLMYILTPIRLGLIDRVTGTFVGALRGVLLSYVLFFAMHLYCYTVHDKKEEQSKIEAEDILPNWIINSYSYQALFATVEDIVDVYVPESLILKIKEIGEGMANQEKLKGDKKEE
4KTW Chain:A ((1-160))
--------MKKILAINFSTASKK-GEGTGYAFRKDGQVYVGSIKAYNPKKTAWERTFDIVNAIKDIIDEFDLKGYHLAIETPIMGR--NRKHSITLANCNGYFIGAIDGLVNGYTFIDNSKWCSYHLISGKREQRKEESLELLKA-----TGLVDSNCKDDNIADAYN---ILTYCEHL-----------------
General information:
TITO was launched using:
RESULT:
Template:
4KTW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -210973 for 1241 contacts (-170.0/contact) +
2D Compatibility (PS) -16427 + (NN) 5476 + (LL) 2704
1D Compatibility (HY) 400 + (ID) 1200
Total energy: -220020.0 ( -177.29 by residue)
QMean score : 0.040
(partial model without unconserved sides chains):
PDB file :
Tito_4KTW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KTW-query.scw
PDB file :
Tito_Scwrl_4KTW.pdb
: