Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHLIVGLGNPGSQYELTYHNIGFIIVDAICKHWNFQ-SFSKKADCLITSSVINDNKIMLMKPYSFMNNSGIPVARIRNFYKFSLDNVIVIHDDADLEPGRIKIKKGGGSAGHNGLKSIDSSIGN-DYWRLRFGIGRSDSQRSLADYVLSKFSNLD--DVIPLVERIAQNIHLMLQGNNIAFTNSIV
3KJZ Chain:A ((6-177))
--LVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTTVVLAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVASALGTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEVPTIVEQAADATELLIAQGLEPAQNTVH
General information:
TITO was launched using:
RESULT:
Template:
3KJZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127715 for 1356 contacts (-94.2/contact) +
2D Compatibility (PS) -17720 + (NN) -635 + (LL) 252
1D Compatibility (HY) -11200 + (ID) 3050
Total energy: -160068.0 ( -118.04 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_3KJZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KJZ-query.scw
PDB file :
Tito_Scwrl_3KJZ.pdb
: