Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFLALPALFLWLLNWTLVKEIWRFNDLMQEA--PEEERQLIIYR-------LVDTLPFITQ--TTYDLSAVASVNLSVNKLIEKYGENLSKDGFYTQLNRENTTNIEGYIKQSNEFKAEEKSHALKCLGFINRIEDKFQDNCSKLTLKQADILY
4GIP Chain:A ((6-68))
--------------------------LMQIGVIPTNVRQLMYYTEASSAFIVVKLMPTIDSPISGCNITSISSYNATVTKLLQPIGENLETIRNQLIPTRRR----------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4GIP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4455 for 162 contacts (-27.5/contact) +
2D Compatibility (PS) -5386 + (NN) 139 + (LL) 5792
1D Compatibility (HY) -6800 + (ID) 1000
Total energy: -11710.0 ( -72.28 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_4GIP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GIP-query.scw
PDB file :
Tito_Scwrl_4GIP.pdb
: