Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRDEDLELLKFYYEVGIDCTLTEGNEEKKVEKEKNSKAIQSPTIQAEVQKKEQQSMFPSDWIIEARKLASKCNSMDELRSAVKSFEGCEIKKTSTNTVFSDGNQSAKIMLVGEAPGANEDLKGIPFCGASGMLLDKMLSAINLDRTKVYISNTVFWRPPGNRKPTDLELDMCRPFVEKHIALISPHILILVGGISCYSLLDN-TKTISTLRGRFHTYTNQYLSYSITTAVIFHPAYLLRQPA--QKRLAWEDLKKIREYLNSTNNCTGV
1VK2 Chain:A ((15-203))
---------------------------------------------------------------------TREELMEIVSERVKKCTACPLHLNRTNVVVGEGNLDTRIVFVGEGPGEEEDKTGRPFVGRAGMLLTELLRESGIRREDVYICNVVKCRPPNNRTPTPEEQAACGHFLLAQIEIINPDVIVALGATALSFFVDGKKVSITKVRGNPIDWL-----GGKKVIPTFHPSYLLRNRSNELRRIVLEDIEKAKSFIKKE------
General information:
TITO was launched using:
RESULT:
Template:
1VK2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107886 for 1720 contacts (-62.7/contact) +
2D Compatibility (PS) -20780 + (NN) -14568 + (LL) 5852
1D Compatibility (HY) -13200 + (ID) 3050
Total energy: -153632.0 ( -89.32 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_1VK2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VK2-query.scw
PDB file :
Tito_Scwrl_1VK2.pdb
: