Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFKSIFTFSFFTAVSRISGLIRDILIAMVVGATSLADVFFSSFRFASLFRAFFAERAFATSFVPLYSAESRDSKRAFNFASSVISITFIIVLNFCLIMQTFFSYMVQIFTPGFDQSKLALAVTLSRIMMPYIIFASIASLIGGMLQVKQHFASTAIAPIILNLCLIASLLVPYIKTPAHNLSIAVLIGGMLQLLLMLFGAYKLKAFFFFSMKLSNEVKLFFKRVIPAIINSCVIQISLWIDTIMASFIPNAVSYIYYADRLNQLPQGVVGTAIGTVLLPLISKQANDTENTVKIQNRALNIGLMLIMPTTAAFIIIPNTILLTLFSYGKFDHYAVQQTAPTLIALSLSL-PAFIINKVLLPTFFAKSNLKIPTIFSLACLGINVVLNLLLMNKYQHTGIAIATSISTWINSILLINYLTINKMYKANQVLLLNIAKILVATAVMSVALYVSSSLSAGLFFDRIFARVIYLAALVVLSAVIYFGTLYLMFMGDFKCTKL |
1KK1 Chain:A ((6-410)) | --SRQAEVNIGMVGHVDHG--KTTLTKALTGVWTDSEELRRGITI----KIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLA---------------------GASLMDGAILVIAANEPCPRPQTREHLMALQIIGQ-------KNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAP-IIPISALHGANIDVLVKAIEDFI------------PTPKRDPNKPPKMLVLRSFDVNKPGKLVGGVLDGSIVQGKLKVG-DEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGG-------------LVGVGTKLDPYLTKGDLMAGNVVGKPG-------KLPPVWDSLRLEVHLLERVVEQELKVEPIKR---KEVLLLNVGT--------ARTMGLVTGLGKDEIEVKLQIPVCAEPGDRVAISRQIGSRWRLIGYGIIKE-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KK1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -447317 for 3365 contacts (-132.9/contact) +
2D Compatibility (PS) -41897 + (NN) 1111 + (LL) 10132
1D Compatibility (HY) 2400 + (ID) 2250
Total energy: -477821.0 ( -142.00 by residue)
QMean score : 0.118
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