Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSISSPRINVMLDSVRSASKQLMRDFNELQISNVKSADFINKTYSRSKQTIYNCLHDYKQDYGFIFEDDIDQEAKE---KDYTWFIMPIEGRENFSSRMVYFAVSVCLVHKNKVVAAVVNTPALRETFWAEEKKGAFL----------EDFRSRHIKMRMKSHEG--SLIDVSGNLLNKLLPGNSNIRSVGSTVLGFTYLAAGRYSGIVYSGVNKYKALLGRLLLQESAGRLTEDNGFIIAGDVKLT
1IME Chain:A ((41-240))
-------------------------------------DLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHRFPFVAVSIGFAVNKKIEFGVVYSCVEGKMYTARKGKGAFCNGQKLQVSQQEDITKSLLVTELGSSRTPETVRMVLSNMEKLFCIPVHGIRSVGTAAVNMCLVATGGADAYYEMGIHCWDVAGAGIIVTEAGGVLMDVTGGPFDLMSRRV
General information:
TITO was launched using:
RESULT:
Template:
1IME.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98316 for 1414 contacts (-69.5/contact) +
2D Compatibility (PS) -19841 + (NN) -4847 + (LL) 2776
1D Compatibility (HY) -10400 + (ID) 2150
Total energy: -132778.0 ( -93.90 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_1IME.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IME-query.scw
PDB file :
Tito_Scwrl_1IME.pdb
: