Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKFLEGLLIWLVIIVLISVAYIQFSGNIGKSKTTIPFSEFLTKLEDNDIENIVIKNQSIEGKFRDGSNFNSSGIIYSDLIKGLHDKKVKFSFSTGDSAMSIIGRLLIQWIPTFIFIGLLLFLLKQTQTGGNRTISFGKSKARLMTSGKKVTFDDVAGIDEAKEELVEIVDFLKQRQKFQVLGGKIPKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFDQGKKNAPCIIFIDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVIIVAATNRPDVLDPALLRPGRFDRQITISLPDINGRERILNTHIKKISIAPDVNVKTVARGTPGFSGADLANLVNESALIAARRNKKIVTMDDFEYARDKVMMGVERRSLMMTEEEKKLTAYHEAGHAIVAVNMSASDPIHKATIIPRGRALGLVMRLPETDRVSHTREKMIADITVAMGGRVAEELIFGYDKITSGASSDIKQASDLSRAMVTKWGMSDKIGPVYHNREQNVHSSDIISEDTLKLIDEEVKRVVSSCYEKAKDILTKRCKDLELIAENLLEFETLTGDEIKDILSGKKIVRNDNESKEKVRKSSL |
| 1IY1 Chain:A ((12-252)) | -----------------------------------------------------------------------------------------------------------------------------------------------------KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR---------NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1IY1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136982 for 1882 contacts (-72.8/contact) +
2D Compatibility (PS) -25521 + (NN) -16002 + (LL) 25908
1D Compatibility (HY) -23600 + (ID) 7750
Total energy: -183947.0 ( -97.74 by residue)
QMean score : 0.623
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