Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNGTVNKVILVGNLGRNPEIRTMQNGKEMANFSIATSEGWTDKFSGVR--SEKTEWHNIVIFSEGLVKVVKDFVRKGSKVYIEGSLKTRKWTDQNGSERYTTEVVLQNFNGTLTLLDSRNNAASSDYKSNEYKQDETGQKDQYENFDSEVKEELIDDEIPF
1S3O Chain:A ((13-121))
----SLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRS------DVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLS------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1S3O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40785 for 610 contacts (-66.9/contact) +
2D Compatibility (PS) -10132 + (NN) 411 + (LL) 2092
1D Compatibility (HY) -8400 + (ID) 1750
Total energy: -58564.0 ( -96.01 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_1S3O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S3O-query.scw
PDB file :
Tito_Scwrl_1S3O.pdb
: