Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQATYASISLPGISSVEDVLEDARFGKLFILVDDENRENEGDLIVLAEKLKPEHVAFMVRYGTGIVFLAMTRLHMGRLGLEFMRRSNIDEKLTPHTAFTTSIDARYGIATGVSAHDRTHTILTAIDGKSTQDDIITPGHVFPIIANDGGVLARNGHTEASVEIAKLIGYNHAAVGCELVNDDGSMMRLPELLKFAEQHNIKLTTIDKLIRYIKKLS
3MK5 Chain:A ((10-210))
-------------LDSVERAVADIAAGKAVIVIDDED---EGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMY--------------TVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE
General information:
TITO was launched using:
RESULT:
Template:
3MK5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122424 for 1595 contacts (-76.8/contact) +
2D Compatibility (PS) -20599 + (NN) -8966 + (LL) 1836
1D Compatibility (HY) -12800 + (ID) 4450
Total energy: -167403.0 ( -104.95 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_3MK5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MK5-query.scw
PDB file :
Tito_Scwrl_3MK5.pdb
: