Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARRNKARKRKISPDSRYDSVLLMRFINVIMKYGKKSVAEKIVYNALSSAEKEVNERGVSIFETAVENVTPSVEVRSRRIGGATYQVPVEVKKDRAVSLALRWIVKSASAMRKKSGKGFFKCLCSEILDAYNKRGGAFKMCEEKYKMAEANKAFSHLRF
1IBK Chain:G ((2-156))
-ARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAAN---QRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW
General information:
TITO was launched using:
RESULT:
Template:
1IBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70884 for 1136 contacts (-62.4/contact) +
2D Compatibility (PS) -16727 + (NN) -6757 + (LL) 660
1D Compatibility (HY) -10400 + (ID) 3450
Total energy: -107558.0 ( -94.68 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_1IBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IBK-query.scw
PDB file :
Tito_Scwrl_1IBK.pdb
: