Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTINWQAKDPEGNSINCSMTVKVGSGGIQSATGGFGVSKFKSPLPEGKKSEILKLVEQNKEVFISGKTLYKAFTDVGQSVDD
2DG5 Chain:B ((3-22))
---HYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDANAVGPNKRPLSSMSPTIVVK
General information:
TITO was launched using:
RESULT:
Template:
2DG5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -979 for 66 contacts (-14.8/contact) +
2D Compatibility (PS) -2012 + (NN) 313 + (LL) 464
1D Compatibility (HY) -1600 + (ID) 200
Total energy: -4014.0 ( -60.82 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_2DG5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DG5-query.scw
PDB file :
Tito_Scwrl_2DG5.pdb
: