Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDENINFETDTTFALIKEAQRRKYKVFAYAPSNLALKLNQPIALAQK-VSVDDCNFTSKEDVVINLNEMDIIFIRQDPPFDMRYITTTYILEKTRALVI-NNPTEMRNCPEKLITSLFP----ELIPPTLITENISMIRDFYHDYR-GIILKPLYSYGGNDVIRIQNENSIQVVVELMIT-KYKCPVIAQAFCKNVNKDKRILLLDGQPIGV-MKRV-PRV-SGEIRTNLRLGASFEPVEMNDRD-----NEICNKIGPELKKRG---LIFVGIDIVDD----FLLEINITSPTGVV-YINKLYNTSLEKDLWNTFEEKASSHISQPSL |
| 2IP4 Chain:A ((17-312)) | ---------------WKAAQSPRVKRLYAAPGNAGMEA--LAELVPWNGD-VEALAD-----WALAEGIDLTLVGPEAPL---VEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREPLEALAYLEEVGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLEGEEATVLALTDGETILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYPMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTREGPKVLEFNARFGDPEAQALLPLLENDLVELALRVAEGRLAGTRLSWKE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2IP4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -124601 for 2020 contacts (-61.7/contact) +
2D Compatibility (PS) -28197 + (NN) 2664 + (LL) 1768
1D Compatibility (HY) -800 + (ID) 1650
Total energy: -150816.0 ( -74.66 by residue)
QMean score : 0.253
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