Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLRLLCEIEYEVRGMENIPKYPFVIASKHQSPLETFIFILLFRNAVFILKRELKWIPFIGLHLMALRMIFINRSDGINAMRHIIKLARMRIAENRSIIIFPEGTRTAAKQKTKYQPGIAALYSVLSVPVLPVALNTGLFWPKSILSMRRNPGKAVIEILPPIYHGLNKNEFLKNLEKTIEERSNKLTAEKN |
3P8K Chain:A ((50-65)) | ------------------------------------------------------------------------------------------MNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGEYVA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3P8K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1716 for 35 contacts (-49.0/contact) +
2D Compatibility (PS) -1786 + (NN) -1122 + (LL) 9220
1D Compatibility (HY) -2000 + (ID) 100
Total energy: 2496.0 ( 71.31 by residue)
QMean score : 0.366
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