Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPISLPKVRGIYRYSVLMSKITWLNVGGQADILFKPRDIEDLIYLIKNTKLPISVIGATSNMIVRD--------SGIRGITVKLGKEFAYIKYKSNNSIIAGGAALLSNLAYFAGEQQVSGLEFLVGIPGTIGGGIEMNAGAYGSDVASVVQSIKAVNLSDGNLYEFSSKEMGYVYRG----HSLKGQWIFIEAEFKGVSSGHEVI----LHRL-------KEIIN------KKNKSQPVRGKTAGCIFKNP---------------------------RAYQAWKLIDGSGCRGLNNGGAKISKKHCNFLLNYNNATASDLENLGNKVRNTVKDKFNIELEWEIRVLGSH |
| 2MBR Chain:A ((40-329)) | ---------------------------------------------------PVLILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLH--------VGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDSVELATGKQVRLTAKECRFGYRDSIFKHEYQDRFAIVAVGLRLPKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKLPDPKVNGNAGSFFKNPVVSAETAKALLSQFPTAPNYPQADGSVKLAAGW-LIDQCQLKGMQIGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNVWLEPEVRFIGAS |
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General information:
TITO was launched using:
| RESULT:
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Template: 2MBR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118338 for 1810 contacts (-65.4/contact) +
2D Compatibility (PS) -24717 + (NN) -4613 + (LL) 4312
1D Compatibility (HY) -18000 + (ID) 3450
Total energy: -164806.0 ( -91.05 by residue)
QMean score : 0.407
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