Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITLDGRLVAHKHINVNKGELAHRHSTLAGGKPV--LCP-VLKVEKGKITYIGNNSEHYKPALANLYNAVKN
3LYG Chain:A ((85-110))
-----------------------------SDKMIASQLSVLFKFEGDQIYEERWFVDTEQWKSVF-------
General information:
TITO was launched using:
RESULT:
Template:
3LYG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1279 for 66 contacts (-19.4/contact) +
2D Compatibility (PS) -2695 + (NN) -581 + (LL) 2520
1D Compatibility (HY) -1200 + (ID) 200
Total energy: -3435.0 ( -52.05 by residue)
QMean score : 0.375
(partial model without unconserved sides chains):
PDB file :
Tito_3LYG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LYG-query.scw
PDB file :
Tito_Scwrl_3LYG.pdb
: