Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLDIRLFRNEPDTVKSKIELRG---DDPKVVDEILELDEQRRKLISATEEMKARRNKVSEEIALKKRNKENADDVIAEMRTLGDDIKEKDSQLNEIDNKMTGILCRIPNLISDDVPQGESDEDNVEVKKWGTPREFSFEPKAHWDIVEELKMADFDRAAKVSGARFVYLTNEGAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKVEKEGLYTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEMVRFEQP--EDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDIEVWLPSYNDYKEISSCSNCTDFQARRANIRFKRDKAAKPELAHTLNGSGLAVGRTFAAIVENYQNEDGTVTIPEALVPFMGGKTQISKPVK |
1SET Chain:A ((1-413)) | MVDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRL----QEVQTERNQVAKRVP--KAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVG-GEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMD-FMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRY-RDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYMG---------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1SET.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -84370 for 3275 contacts (-25.8/contact) +
2D Compatibility (PS) -43886 + (NN) -15532 + (LL) 1396
1D Compatibility (HY) -27600 + (ID) 7500
Total energy: -177492.0 ( -54.20 by residue)
QMean score : 0.443
|
|
|