Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQSIPALPVGDIKKSIGFYCDKLGFTLVHHEDGFAVLMCNEVRIHLWEASDEGWRSRSNDSPVCTGAESFIAGTASCRIEVEGIDELYQH-IKPLGILHPNTSLK-----DQWWDERDFAVIDPDNNLISFFQQIKS
1JIF Chain:A ((4-118))
FLGAVPVLTAVDVPANVSFWVDTLGFEKDFGDRDFAGVRRGDIRLHI---------SRTE--------HQIVADNTSAWIEVTDPDALHEEWARAVSTDYADTSGPAMTPVGESPAGREFAVRDPAGNCVHF------
General information:
TITO was launched using:
RESULT:
Template:
1JIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70463 for 748 contacts (-94.2/contact) +
2D Compatibility (PS) -11612 + (NN) -3003 + (LL) 1128
1D Compatibility (HY) -4400 + (ID) 1600
Total energy: -89950.0 ( -120.25 by residue)
QMean score : 0.339
(partial model without unconserved sides chains):
PDB file :
Tito_1JIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JIF-query.scw
PDB file :
Tito_Scwrl_1JIF.pdb
: