Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKIKIVPLILIVVVVGFGIYFYASKDKEINNTIDAIEDKNFKQVYKDSSYISKSDNGEVEMTERPIKIYNSLGVKDINIQDRKIKKVSKNKKRVDAQYKIKTNYGNIDRNVQFNFVKEDGMWKLDWDHSVIIPGMQKDQSIHIENLKSERGKILDRNNVELANTGTAYEI-GIVPKN----------VSKKDYKAIA----KELSISEDYIKQQMDQNWVQDDTF---------VPLKTVKKMDEYLSDFAKKFHLTTNETESRNYPLGKATSHLLGYVGPINSEELKQKEYKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDNSNTIAHT-LIEKKKKDGKDIQLTIDAKVQKSIYNNM-------KNDYGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDKKEPLLNKF-------QITTSPGSTQKILTAMIGLNNKTLD-----DKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNIDLKQAIESSDNIFFARVALELGSKKFEKGMKKLGVGEDIPSDYPFYNAQISNKNLDNEILLADSGYGQGEILINPVQILSIYSALENNGNINAPHL---LKDTKNKVWKK-------NIISKENINLLTDGMQQVV----------NKTHKEDIYRSYANLIGKSGTAELKMKQ------GETGRQIGWFISYDKDNPNMMMAINVKDVQDKGMASYNAKISGKVYDELYENGNKKYDIDE |
1RP5 Chain:A ((23-542)) | -------------------------------------------------------------------------------------------------------------------------------------------------TVPAKRGTIYDRNGVPIAEDATSYNVYAVIDENYKSATGKILYVEKTQFNKVAEVFHKYLDMEESYVREQLSQPNLKQVSFGAKGNGITYANMMSIKK--ELETAEVKGIDFTT--SPNRSYPNGQFASSFIGLA------QLHENE-DGSK--SLLGTSGMESSLNSILAGTDGIITYEKDRLGNIVPGTEQVSQQTVDGKDVYTTISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFDA-----------------DTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAIDNNTFPGGEVFNSSELKI------ADATIRDWDVNEGLTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFKFG--VPTRFGLTDEYAGQLPADNIVNIAMSAFGQG-ISVTQTQMLRAFTAIANDGVMLEPKFISALYDPNDQSVRKSQKEIVGNPVSKEAASVTRDHMVMVGTDPTYGTMYNHSTGKATVNVPGQNVALKSGTAEIADEKNGGYLTGSTNNIFSVVSMHPAENPDFILYVTVQ---------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RP5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -24633 for 3568 contacts (-6.9/contact) +
2D Compatibility (PS) -47514 + (NN) -9218 + (LL) 12272
1D Compatibility (HY) -22400 + (ID) 6200
Total energy: -97693.0 ( -27.38 by residue)
QMean score : 0.400
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