Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKINRYITRGISEYLSLDLQILLWNMVKERDNQP-HTDYLHIFKLQEDENI-LSITHEQEQPAYKLEYHYTNYVKNQNALPKKVYVIREDGVDAFYYVMLLPEEY
1PK0 Chain:A ((431-495))
------IFRGIQAYNEIE------NVLKSKQIAPEYKNYFQYLKERITNQVQLLLTHQK----FKLLYKQLNFTENE----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PK0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8504 for 303 contacts (-28.1/contact) +
2D Compatibility (PS) -5882 + (NN) -729 + (LL) 4176
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -17039.0 ( -56.23 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_1PK0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PK0-query.scw
PDB file :
Tito_Scwrl_1PK0.pdb
: