Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTTTQELKQYITRLFQLSNNETWECEALEEAAENILPERFINDSPLAHLTLETYTYYNNELHDLSIYPFLMYANNQLISVGYLNHFDMDFLYLTDTKNTIIDERHLLREGGTHHE
1LW3 Chain:A ((522-578))
----------------------TFLCNSEQQRGKENLPKR----------TVSLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLEL---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1LW3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 580 for 215 contacts (2.7/contact) +
2D Compatibility (PS) -5812 + (NN) -329 + (LL) 4132
1D Compatibility (HY) -4000 + (ID) 750
Total energy: -6179.0 ( -28.74 by residue)
QMean score : -0.271
(partial model without unconserved sides chains):
PDB file :
Tito_1LW3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LW3-query.scw
PDB file :
Tito_Scwrl_1LW3.pdb
: