Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIMFVLCGFIFPLTVTALGQV-----LFPEQANGSLVKQDGKVIGSKLIGQQWTEPKYFHGRISAVNYNMNANEVKESGGPASGGSNYGNSNPELKKRVQETIKQEGKKISSDAVTASGSGLDPDITV
1USH Chain:A ((447-499))
--------------LTAVAQMKPDSGAYPQFANVSFVAKDGKLNDLKIKGEPVDPAKTY--RMATLNFN-----------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1USH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1225 for 217 contacts (-5.6/contact) +
2D Compatibility (PS) -4973 + (NN) 772 + (LL) 2792
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -7084.0 ( -32.65 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_1USH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1USH-query.scw
PDB file :
Tito_Scwrl_1USH.pdb
: