Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIEKSQACHDSLLDSVGQTPMVQLHQLFPKHE-----VFAKLEYMNPGGSMKDRPAKYIIEHGIKHGLIT-ENTHLIESTSGNLGIALAMIAKIKGLKLTCVVDPKISPTNLKIIKSYGANVEMVEEPDAHGGYLMTRIAKVQELLATIDDAYWINQYANELNWQSHYHGAGTEIVETIKQPIDYFVAPVSTTGSIMGMSRKIKEGHPNAQIVAVDAKGS-VIFGDKPINRELPGIGASRVPEILNRSEINQVIHVDDYQSALGCRKLIDYEGIFAGGSTGSIIAAIEQLITSIE-EGATIVTILPDRGDRYLDLVYSDTWLEKMKSRQGVKSE |
| 4LMA Chain:A ((11-311)) | -------AHD-VTELVGRTPLVQLNRI-PQAEGCLGRIVMKLEGMNPAASVKDRIGTHMINSAEKAGLINPETTVLVEPTSGNTGIALAMTAAAKGYRLILTMPETMSLERRAMLKAYGATLELT--PGSQG--MKGAILRAQQIVDSIPGAYMLQQFRNPSNPEIHRLTTAEEIWQDTEGQVDFIVAGVGTGGTITGVAEVIKSRKPSFQVVAVEPFNSPVISGGNPGPHKIQGIGAGFIPEVLRTDLIDEVITVSDEEAFQFGRRLAKEEGLLSGISSGANLCAAIQLAQRPENEGKLIVVIQPSFGERYLS-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LMA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -160080 for 2673 contacts (-59.9/contact) +
2D Compatibility (PS) -31890 + (NN) -10277 + (LL) 2580
1D Compatibility (HY) -17200 + (ID) 5800
Total energy: -222667.0 ( -83.30 by residue)
QMean score : 0.452
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