Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKNVEKSFIKIGLYFQIAYIVLMAITLCGFVICYGLIFGLFYLLSGSRADYLIVTIVISAIISIFVIILSIVPVIVLASDLFKERISKGVIL-IVLAIIALVLCNFVSAILWFVSAISILGRKKLVAAADTTTIQKSKGNANQASHKDTCKKELDSQDMMEHPEVKNPTTKNLEGFNEEIHKDEATTKVVSDNTEPPIESKGHVSKKD
3TE2 Chain:A ((165-259))
---------------------------LCNILVCVSVLCS-FRTNSDTAKIIMIFLCLFAFITSGFE--HSVANMTIYSVSLFSPTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEK------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3TE2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100634 for 572 contacts (-175.9/contact) +
2D Compatibility (PS) -9064 + (NN) 1555 + (LL) 7804
1D Compatibility (HY) -9600 + (ID) 1200
Total energy: -111139.0 ( -194.30 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_3TE2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TE2-query.scw
PDB file :
Tito_Scwrl_3TE2.pdb
: