Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSTPHIKPMNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNTVRNMFGFTGTYKGKKVSVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENIDLYDVIIAQGASTDSNYVQQYQLPGHFAPIASYQLLEKAVETARDKGVRHHVGNVLSSDIFYNADTTASERWMRMGILGVEMESAALYMNAIYAGVEALGVFTVSDHLIHETSTTPEERERAFTDMIEIALSLV
4DA0 Chain:A ((31-251))
-------------QIADTVLLPGDPLRAKFIAETYLENVECYNEVRGMYGFTGTYKGKKISVQGTGMGVPSISIYVNELIQSYDVQNLIRVGSCGAIRKDVKVRDVILAMTSSTDSQMNRVAFGSVDFAPCADFELLKNAYDAAKDKGVPVTVGSVFTADQFYNDDSQI-EKLAKYGVLGVEMETTALYTLAAKHGRKALSILTVSDHVLTGEETTAEERQTTFHDMIDVALHSV
General information:
TITO was launched using:
RESULT:
Template:
4DA0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169430 for 1923 contacts (-88.1/contact) +
2D Compatibility (PS) -24158 + (NN) -6715 + (LL) 544
1D Compatibility (HY) -22800 + (ID) 6000
Total energy: -228559.0 ( -118.86 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_4DA0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DA0-query.scw
PDB file :
Tito_Scwrl_4DA0.pdb
: