Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKRQMGIFIYAGIIGGLLSGIVKLGW---EVMFPPRTPER------NATNPPQELLQQLG-------------FSSEFTHQTYTFSNMELPWV----SFIVHFSFSIVIAI--------IYCILVKKYAYLAIGQGAVFGIAIWVLFHLI----IMPIMHTVPAVWDQPYQEHLSEFFGHIVWMMTIELVR-QHFVYRYKLN------
2A35 Chain:A ((4-215))
-TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTIARPSLLFGPREEFRLAEILAAPIAGKYHGIEACDLARALWRLALEEGKGVRFVESDELRKLGKGS
General information:
TITO was launched using:
RESULT:
Template:
2A35.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145362 for 1153 contacts (-126.1/contact) +
2D Compatibility (PS) -16679 + (NN) 976 + (LL) 208
1D Compatibility (HY) -2400 + (ID) 1500
Total energy: -164757.0 ( -142.89 by residue)
QMean score : 0.210
(partial model without unconserved sides chains):
PDB file :
Tito_2A35.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A35-query.scw
PDB file :
Tito_Scwrl_2A35.pdb
: