Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKNDLLVMSVVY----------ILTSVIMFYINGLSKQFFTYVVGFPIIYFGYICLVNLIKKRSRNN---
1NY4 Chain:A ((1-71))
MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIKSRR
General information:
TITO was launched using:
RESULT:
Template:
1NY4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59784 for 287 contacts (-208.3/contact) +
2D Compatibility (PS) -6458 + (NN) -1489 + (LL) 0
1D Compatibility (HY) 0 + (ID) 250
Total energy: -67981.0 ( -236.87 by residue)
QMean score : 0.319
(partial model without unconserved sides chains):
PDB file :
Tito_1NY4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NY4-query.scw
PDB file :
Tito_Scwrl_1NY4.pdb
: