Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQDTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLAEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKENPPIPGHYDGVGIEIVRENK
2NM3 Chain:A ((1-121))
MQDTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKENPPIPGHYDGVGIEIVRENK
General information:
TITO was launched using:
RESULT:
Template:
2NM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54039 for 860 contacts (-62.8/contact) +
2D Compatibility (PS) -13145 + (NN) -5361 + (LL) 0
1D Compatibility (HY) -17200 + (ID) 6000
Total energy: -95745.0 ( -111.33 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_2NM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NM3-query.scw
PDB file :
Tito_Scwrl_2NM3.pdb
: