Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLNLGSKKQASFYVACELYKEM-AF----NQHCKLGLATGGTMTDLYEQLVKLLNKNQLNVDNVSTFNLDEYVGLTASHPQSYHYYMDDMLFKQYPYFNRKNIHIPNGDADDMNAEASKYNDVLEQQGQRDIQILGIGENGHIGFNEPGTPFDSVTHIVDLTESTIKANSRYFKNE-DDVPKQAISMGLANILQAKRIILLAFGEKKRAAITHLLNQEISVDVPATLLHKHPNVEIYLDDEACPKNVAKIHVDEMD
1FS5 Chain:A ((1-243))
MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVD-IPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPS--------------
General information:
TITO was launched using:
RESULT:
Template:
1FS5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137022 for 2015 contacts (-68.0/contact) +
2D Compatibility (PS) -25944 + (NN) -15610 + (LL) 992
1D Compatibility (HY) -20000 + (ID) 3950
Total energy: -201534.0 ( -100.02 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_1FS5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FS5-query.scw
PDB file :
Tito_Scwrl_1FS5.pdb
: