Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEIVIASNNQGKINDFKVIFPDYHVIGISELIPDFDVEETGSTFEENAILKSEAAAKALNKTVIADDSGLEVFALNGEPGIYSARYAGENKSDEANIEKLLNKLGNTTDRRAQFVCVISMSGPDMETKVFKGTVSGEIADGKYGENGFGYDPIFYVPKLDKTMAQLSKEQKGQISHRRNAINLLQAFLEGEKNV
2DVO Chain:A ((62-181))
----------------------------------------------------------------MIEDSGLFIESLKGFPGVYSSYVY-----RTIGLEGILKLMEGAEDRRAYFKSVIGFY-IDGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKNALSHRGKA---LKAFFEWLK--
General information:
TITO was launched using:
RESULT:
Template:
2DVO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27741 for 894 contacts (-31.0/contact) +
2D Compatibility (PS) -12891 + (NN) -6882 + (LL) 4760
1D Compatibility (HY) -7600 + (ID) 2400
Total energy: -52754.0 ( -59.01 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_2DVO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DVO-query.scw
PDB file :
Tito_Scwrl_2DVO.pdb
: