Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDLPIIALDFESKEKVNQFLDLFDESLFVKVGMELFYQEGPQLINEIKERGHDVFLDLKLHDIPNTVGKAMEGLAKLNVDLVNVHAAGGVKMMSEAIKGLRKHNQHTKIIAVTQLTSTTEDMLRHEQNIQTSIEEAVLNYAKLANAAGLDGVVCSPLESRMLTEKLGTSFLKVTPGIRPKGASQDDQHRITTPEEARQLGSTHIVVGRPITQSDNPVESYHKIKESWLV
1VQT Chain:A ((15-210))
----PVLSLDMEDP---IRFIDENGSFEVVKVGHNLAIH-GKKIFDELAKRNLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSCAGYESVERALSATDKH-----VFVVVKLTS-----------MEGSLEDYMDRIEKL-NKLGCDFVLPGPW-AKALREKIKGKIL--VPGIR----------DVVTLEEMKGI-ANFAVLGREIYLSENPREKIKRIKE----
General information:
TITO was launched using:
RESULT:
Template:
1VQT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105428 for 1485 contacts (-71.0/contact) +
2D Compatibility (PS) -19706 + (NN) -3828 + (LL) 2668
1D Compatibility (HY) -16000 + (ID) 3300
Total energy: -145594.0 ( -98.04 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_1VQT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQT-query.scw
PDB file :
Tito_Scwrl_1VQT.pdb
: