Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKKIPMRKCILSNEMHPKKDMIRVVVNKEGEIFADVTGKKQGRGAYVSKDVAMVEKAQQKEILEKYFKASKEQLDPVYKEIIRLIYREEIPK
2DS5 Chain:A ((9-44))
-----GKLLYCSFCGKSQHEVR----------KLI-------AGPSVYICD--ECVDLCN----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2DS5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1100 for 210 contacts (-5.2/contact) +
2D Compatibility (PS) -3784 + (NN) -1412 + (LL) 5208
1D Compatibility (HY) -2400 + (ID) 200
Total energy: -3688.0 ( -17.56 by residue)
QMean score : 0.297
(partial model without unconserved sides chains):
PDB file :
Tito_2DS5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DS5-query.scw
PDB file :
Tito_Scwrl_2DS5.pdb
: